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最新动植物基因组数据打包下载地址(Ensembl,NCBI,UCSC)  

2015-05-28 23:26:03|  分类: 生物信息分析 |  标签: |举报 |字号 订阅

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The iGenomes are a collection of reference sequences and annotation files for commonly analyzed organisms. The files have been downloaded from Ensembl, NCBI, or UCSC, and chromosome names have been changed to be simple and consistent with their download source. Each iGenome is available as a compressed file that contains sequences and annotation files for a single genomic build of an organism.

For more information, see the iGenomes Overview and Change Log.

SPECIESSOURCEBUILD(S)
Arabidopsis thalianaEnsemblTAIR10TAIR9
NCBITAIR10build9.1
Bacillus_cereus strain ATCC 10987NCBI2003-02-13
Bacillus_subtilis strain 168EnsemblEB2
Bos taurus (Cow)EnsemblUMD3.1Btau_4.0
NCBIUMD_3.1Btau_4.6.1Btau_4.2
UCSCbosTau7bosTau6bosTau4
Caenorhabditis elegansEnsemblWBcel235WBcel215WS210
NCBIWS195WS190
UCSCce10ce6
Canis familiaris (Dog)EnsemblCanFam3.1BROADD2
NCBIbuild3.1build2.1
UCSCcanFam3canFam2
Danio rerio (Zebrafish)EnsemblZv9
NCBIZv9
UCSCdanRer7
Drosophila melanogasterEnsemblBDGP5BDGP5.25
NCBIbuild5.41build5.3build5build4.1
UCSCdm3
Enterobacteriophage lambdaNCBI1993-04-28
Equus caballus (Horse)EnsemblEquCab2
NCBIEquCab2.0
UCSCequCab2
Escherichia coli strain K12, DH10BEnsemblEB1
NCBI2008-03-17
Escherichia coli strain K12, MG1655NCBI2001-10-15
Gallus gallus (Chicken)EnsemblGalgal4WASHUC2
NCBIbuild3.1build2.1
UCSCgalGal4galGal3
Glycine maxEnsemblGm01
Homo sapiensEnsemblGRCh37
NCBIbuild37.2build37.1build36.3
UCSChg19hg18
Macaca mulattaEnsemblMmul_1
Mus musculus (Mouse)EnsemblGRCm38NCBIM37
NCBIGRCm38build37.2build37.1
UCSCmm10mm9
Mycobacterium tuberculosisstrain H37Rv.EB1EnsemblH37Rv.EB1
NCBI2001-09-07
Oryza sativa japonica (Rice)EnsemblIRGSP-1.0MSU6
Pan troglodytes(Chimpanzee)EnsemblCHIMP2.1.4CHIMP2.1
NCBIbuild3.1build2.1
UCSCpanTro4panTro3panTro2
PhiXIlluminaRTA
NCBI1993-04-28
Pseudomonas aeruginosastrain PAO1NCBI2000-09-13
Rattus norvegicus (Rat)EnsemblRnor_5.0RGSC3.4
NCBIRnor_5.0RGSC_v3.4
UCSCrn5rn4
Rhodobacter sphaeroidesstrain 2.4.1NCBI2005-10-07
Saccharomyces cerevisiae(Yeast)EnsemblR64-1-1EF4EF3EF2
NCBIbuild3.1build2.1
UCSCsacCer3sacCer2
Schizosaccharomyces pombeEnsemblEF2EF1
Sorangium cellulosum strain So_ce_56NCBI2007-11-27
Sorghum bicolorEnsemblSbi1
Staphylococcus aureusstrain NCTC 8325NCBI2006-02-13
Sus scrofa (Pig)EnsemblSscrofa10.2Sscrofa9
NCBISscrofa10.2Sscrofa10Sscrofa9.2
UCSCsusScr3susScr2
Zea mays (Corn)EnsemblAGPv3AGPv2

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