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IGMAP: An Interactive Mapping and Clustering Platform for Plants  

2015-04-25 09:31:42|  分类: 默认分类 |  标签: |举报 |字号 订阅

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IGMAP is the first public platform dedicated to plant gene mapping and clustering. The available online mapping tools, for example, chromosomal mapping tools for Arabidopsis, rice, and poplar (available at https://www.arabidopsis.org/jsp/ChromosomeMap/tool.jsphttp://viewer.shigen.info/oryzavw/maptool/MapTool.do, andhttp://popgenie.org/chromosome-diagram, respectively) are species specific in nature and have several other limitations including the inability to carry out clustering or generate interactive maps, and require prior knowledge of gene IDs. IGMAP, in contrast, does not rely solely on gene IDs, facilitates detection and interactive visualization of duplications, performs dynamic criterion-based clustering, and creates high-resolution genome maps of clusters, as explained below.
IGMAP: An Interactive Mapping and Clustering Platform for Plants - 喜欢吃桃子 - wangyufeng的博客
 The IGMAP System.

(A) The overall work flow and front end of IGMAP, along with acceptable input types, back end, and external links. For example, as shown in the lower right corner, all maps of the food legume chickpea are further linked to the chickpea genome browser. Six important plant gene families have been tested using IGMAP and the results are provided online in the form of species trees.

(B) Example outcomes of IGMAP in the form of interactive spatial maps for isoprenoids in cotton (a) and rice (b), revealing a distinct clustering of terpene synthase (TPS) genes. Each horizontal annotation, representing one gene or a cluster of genes, is clickable and returns a table with more information on the gene or cluster of interest.

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