注册 登录  
 加关注
   显示下一条  |  关闭
温馨提示!由于新浪微博认证机制调整,您的新浪微博帐号绑定已过期,请重新绑定!立即重新绑定新浪微博》  |  关闭

wangyufeng的博客

祝愿BB 健康开心快乐每一天

 
 
 

日志

 
 

BrowserGenome.org:基于网页的RNA-seq数据分析及可视化工具  

2015-11-04 08:34:14|  分类: 生物信息分析 |  标签: |举报 |字号 订阅

  下载LOFTER 我的照片书  |

Applications of deep-sequencing technologies in life science research and clinical diagnostics are rapidly expanding. Although fast data-processing algorithms exist, intuitive, portable data-evaluation solutions are still needed. Web tools have a history in bioinformatics of providing platform-independent, intuitive, barrier-free software solutions. Whereas in most scientific web tools a server performs intense calculations, the new HTML5 standard and the competition between web browser platforms have recently opened access to computational resources for web apps. However, so far web apps have been used only to visualize existing genome annotations or alignment data.

Here, researchers from the University of Bonn describe BrowserGenome a web-based deep-sequencing data-analysis platform offering barcode deconvolution, read mapping, real-time data visualization, transcript-count analysis and data normalization. BrowserGenome is specifically focused on the eva,luation of mRNA-seq data, but it can easily be extended to other applications. BrowserGenome matches the speed and memory footprint of state-of-the-art software while being visually driven and intuitive to use.

BrowserGenome.org:基于网页的RNA-seq数据分析及可视化工具 - 喜欢吃桃子 - wangyufeng的博客

The circular representation of the genome can be intuitively moved and zoomed with mouse or track pad gestures. Up to six tracks of deep-sequencing data can be displayed as concentric circles, and even large data sets can be visualized in real time.

Availability – http://www.BrowserGenome.org

Schmid-Burgk JL, Hornung V. (2015) BrowserGenome.org: web-based RNA-seq data analysis and visualizationNat Methods 12(11):1001. [abstract]

 

  评论这张
 
阅读(722)| 评论(0)
推荐 转载

历史上的今天

在LOFTER的更多文章

评论

<#--最新日志,群博日志--> <#--推荐日志--> <#--引用记录--> <#--博主推荐--> <#--随机阅读--> <#--首页推荐--> <#--历史上的今天--> <#--被推荐日志--> <#--上一篇,下一篇--> <#-- 热度 --> <#-- 网易新闻广告 --> <#--右边模块结构--> <#--评论模块结构--> <#--引用模块结构--> <#--博主发起的投票-->
 
 
 
 
 
 
 
 
 
 
 
 
 
 

页脚

网易公司版权所有 ©1997-2017