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GNLab: Computational Pipeline for Large-Scale Gene Network Analysis  

2012-04-25 21:21:15|  分类: 生物信息分析 |  标签: |举报 |字号 订阅

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    GNLab (Gene Network virtual Laboratory) is a novel bioinformatics tool for the large-scale analysis of gene regulatory networks (GRNs). This C++ command-line tool supports the analysis of both the static structure and dynamic behaviour of a GRN. GNLab is developed to support the design and implementation of large-scale repeatable computational experimentations on GRNs.

GNLab consists of separable components for network generation, simulation, analysis, visualization, comparison and inference. Through the use of a user-defined script, these components can be piped together to construct a pipeline of GRN analysis. Each component can be invoked by a command-line option. These options are described here. Sample applications of GNLab can be found here.
GNLab: Computational Pipeline for Large-Scale Gene Network Analysis - 喜欢吃桃子 - wangyufeng的博客
 

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GNLab is an open-source program distributed under the GNU General Public License. Please read and agree the terms and conditions set out by this license before downloading the executable and/or the source code.

The executable version of GNLab is available for the following operating systems:

The details of the command-line options is described in the file USAGE.txt.

The C++ source files are available here.

User Guide

A PDF file describing the details of the model and implementation of GNLab is available here.

Sample Scripts

Some sample scripts are available here.

License

GNLab: A computational pipeline for large-scale gene network analysis
Copyright ? 2006-2007 The University of Sydney  

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

Reporting Bugs

If any bug in GNLab is encountered, please contact Joshua Ho. Bug reports are highly appreciated.

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