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群体遗传学可视化工具列表:Population Genetics Visualization Tools  

2012-12-07 22:47:59|  分类: 数量遗传学 |  标签: |举报 |字号 订阅

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Populus 
The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a menu, and students can move among the parameter boxes of an input window, changing initial defaults to values of their own choosing. Most modules offer several graphical outputs of model dynamics, and their computational algorithms are detailed in an Acrobat-based help system packaged with the program. 


MATLAB Population Genetics & Evolution Toolbox
PGEToolbox enables population genetists to manipulate polymorphism sequences and SNPs and test for evolutionary neutrality. 


Time Machine
I didn't manage to find the URL but I found a 
paper that describes it.


Evotutor
Learning through interactive simulations.


The textbook by M. Hamilton   has numerous step-by-step simulation activities provided.


The PopG genetic simulation program.
This is a one-locus, two-allele genetic simulation program for use by students. Earlier versions were called Simul8.


 Blender
It is a 3D animation program with python scripting capabilities.  Blender is free, and has an enormous online community that can help should you run into any problems.


PopGen FishBowl
It is an agent-based population genetics simulation. The program contains the tools to conduct virtual experiments violating all the assumptions of Hardy-Weinberg theory (small population, selection, mutation, migration, and non-random mating).


list of Java tools has been compiled by Kent Holsinger.


PopGen
PopGen is a simulation program designed to clarify various population genetic events. It is aimed mainly for teaching purposes. It has been programmed by Jouni Aspi using Microsoft's Visual Basic. The code is based on previous GW-Basic and QuickBasic programs by Jaakko Lumme and Jouni Aspi.


Speciation Animations


 A nice youtube video is here


Allele A1
AlleleA1 simulates evolution at a single locus in an ideal population of imaginary organisms. The locus of interest has 2 alleles: A1 and A2. The user enters values for parameters controlling selection, mutation, migration, genetic drift, and inbreeding. As the simulation runs, the software plots a graph showing the frequency of allele A1 over time.


Hudson Animator
It's a great animator of coalescent trees


msmsplay
MSMSPlay is a GUI designed for simple exploration of basic population genetic theory. Its meant for exploratory runs with some useful output in an interactive fashion.


Red Lynx 

Red Lynx is a population genetics simulator that allows students to explore the effects and interactions of several evolutionary forces.

Pls visit this link for more information:http://www.bio.lmu.de/~pavlidis/home/?Population_Genetics_Visualization_Tools

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