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Microarray, SAGE and other gene expression data analysis tools  

2011-12-28 13:28:22|  分类: 生物信息分析 |  标签: |举报 |字号 订阅

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A light-weight multi-method clustering engine for microarray gene-expression data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Infer a framework of regulatory networks from a large number of gene expression profiles.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Perform automated genetic mapping on a fixed framework map.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web-based interface to detect outlying genechips with extreme studentized deviate tests.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A software tool to characterize Affymetrix GeneChip expression arrays with respect to SNPs.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Identify co-expressed genes based on n a large Arabidopsis thaliana microarray data set.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Automatically apply of complex analyses to microarray data ranging from single slides to large data sets including replicates and dye-swaps.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Integrates various forms of microarray data from diverse annotation and primary data sources.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Predict functional associations between genes based on microarray expression data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Use a web-based Linux platform to implement DNA microarray data analysis programs.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Map and visualize microarray gene-expression data for integrated biological pathway resources using Scalable Vector Graphics (SVG).

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Suite of web tools for the functional profiling of genome scale experiments.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Compare temporal gene expression pattern from different samples.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Software tool for bicluster detection and visualization.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A visualization technique to simultaneously represent all biclusters.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Analyze microarray and promoter data to infer transcriptional regulatory network.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Normalize array comparative genomic hybridization (aCGH) data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web-based tool that applies a number of popular algorithms to a single array CGH profile entered by the user.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A program for locating copy number variations in a single genome.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Find the conserved Transcription Factor Binding Sites (TFBS) in the promoter regions of the genes of given Human genes and the corresponding Mouse homolog.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Conduct multi-facet analysis of composite regulatory signature by transcription factors and microRNA on gene expression.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Understand the relationship between pathways and gene expression.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Retrieve annotation information from online databases such as NetAffx and Gene Ontology and organizing such information into easily interpretable tabular format outputs.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Uses information in the Medline database for the biological interpretation of microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Perform automated comprehensive analyses of promoter regulatory motifs and the effect they exert on mRNA expression profiles.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A tool that takes your data on differential gene expression (i.e. SAGE or microarray data) and predicts additional molecules which may be of importance.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Visualization, normalization and significance testing for pathogen-detection microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Find information about alternative splicing events.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Search for annotated information about gene structure, function and expression, and alternative splicing events.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Perform high throughput annotation of expressed sequence tags (ESTs).

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A comprehensive workflow system for EST data management and analysis.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A data integration and visualization tool to facilitate data analyses, visual validation, and hypothesis generation.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

An easy-to-use, stand-alone application that allows rapid and powerful microarray data analysis in the context of biological pathways.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Use this fully integrated platform for processing microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Analyze microarray gene expression and other functional genomics-related data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

An integrated feature-based function prediction server for vertebrate proteomes.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web-based integrated gene set analysis tool covering previously reported parametric and non-parametric models.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Perform EST-based gene expression profiling and analysis.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Interpret genome-wide DNA copy number changes identified by array-based comparative genomic hybridization.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A user-friendly toolbox for analysis of large-scale gene expression data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A powerful alternative search engine for the Gene Expression Omnibus.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Conduct comprehensive analysis of microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Analyze gene expression patterns from microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Identify functions and processes regulated in microarray and SAGE experiments.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web-based software toolkit for Gene Ontology enrichment analysis.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Allowssimulation of non-multiplicative effects and two-way interaction effects.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Visualize and analyze gene expression data in the context of biological pathways.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Annotate microarray data using information from public databases.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Perform automated data analysis from gene expression experiments on a number of different platforms.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Analyze a set of genes against any chosen reference set or against all genes.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

To visualize and analyze gene expression data, and integrate clustering, gene annotation, and sequence information.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Produce gene expression visualizations.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Use a suite of algorithms and tools for the analysis of gene expression data and the discovery of cis-regulatory sequence elements.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Annotate crude EST (expressed sequence tag) specifically dedicated to comparative mapping approaches.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Compare and annotate user-defined pairs of microarray platforms based on diverse types of genome annotation data (across different species) collected from multiple sources.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web-based tool for visualizing experimental data in the context of biological pathways.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Store, download and export MIAME-compliant microarray experiments in minutes rather than hours.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Infer transcriptional regulation relationships from RNA expression values.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A modular open-source application for microarray workflow and integrative datamining.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A novel normalization method based on the GC content of probes for two-color tiling arrays.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Data mining and visualization tool for rapid analysis of diverse high-throughput biological data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Identify differentially expressed genes from two-channel microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

To create a global gene-expression profile across all areas of biology by integrating the annotations of the Gene Ontology (GO) Project with the free software package GenMAPP.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

An interactive R-based tool for two-colour microarray analysis.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Allows users to rapidly and directly analyze genomic datasets spanning multiple genomic experiments.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Conduct statistical analysis to microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web-based tool for searching and large scale retrieval of public microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Combine the results of multiple gene expression studies.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Search the largest public repository for high-throughput gene expression data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Analyze large amounts of ESTs or cDNAs from mammalia and fungi.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Web platform for cluster and cross-species analysis of microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web server for identifying Gene Ontology conceptual clusters.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A tool for statistical analysis and visualization of high-throughout biological data using Gene Ontology.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Gain insight the evolutionary history of organisms via expressed sequence tag analysis.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Find information about alignment of probe sequences from five Affymetrix expression microarrays.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A tool to aid high-throughput phylogenetic analysis.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Visualize microarray data via heat maps.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Filter common literature, biological terms and pathway information.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Identify key molecular functions or annotation categories and the relationship between them in large-scale expression profiles.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Interpret gene expression data obtained from microarray experiments.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Visualize high-throughput microarray gene expression data on biological pathways.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Perform analysis on gene and protein expression data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Application for the mapping of prokaryotic genes and the corresponding proteins to common gene regulatory and metabolic networks.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A web tool for profiling the complex functionality of gene groups identified from high-throughput data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Find relative expression of a given gene in normal and malignant tissues throughout the human body.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Store, annotate, view, analyze, and share microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Analyze tissue/tumor-specific expression patterns in human and mouse transcriptomes.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Use the t-test to score changes in the average gene expression activity of predefined groups of genes.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Analyze and visualize gene regulatory networks that combines encyclopedic information on signal transduction pathway.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A comprehensive toolbox for storing, analyzing and integrating microarray data and related genotype and phenotype data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Predict gene function using gene expression data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Perform gene ontology microarray analysis by drawing Euler/Venn diagrams.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Cluster and interpret gene expression microarray data.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

A visualization plugin using an extended permutation matrix for exploratory data analysis of multi-experiment microarray studies.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Perform cross-platform microarray analysis

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Search and analyze comprehensive genetic information of a set of genes.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Designed to map millions of short reads, emerged by next-generation sequencing technology, back to the reference genomes, and carry out post-analysis.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Use to analyze spatial-temporal gene expression information.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Reveal information about the complex latent relationships in experimental data sets.

Microarray, SAGE and other gene expression data analysis tools - 喜欢吃桃子 - wangyufeng的博客

Identify the conditions that affect the expression of a gene or list of genes of yeast regulated in a set of experiments.

via:http://www.hsls.pitt.edu/obrc/index.php?page=gene_expression_tools

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