注册 登录  
 加关注
   显示下一条  |  关闭
温馨提示!由于新浪微博认证机制调整,您的新浪微博帐号绑定已过期,请重新绑定!立即重新绑定新浪微博》  |  关闭

wangyufeng的博客

祝愿BB 健康开心快乐每一天

 
 
 

日志

 
 

Genome-wide Association Study Software(GWAS Software)  

2010-10-27 14:51:19|  分类: GWAS |  标签: |举报 |字号 订阅

  下载LOFTER 我的照片书  |

      Some Useful softwares used in GWA studies.

http://www.stats.ox.ac.uk/~marchini/software/gwas/gwas.html

The software included are listed bellow

 

IMPUTE a program for genotype imputation in genome-wide association studies and fine-mapping
studies based on a dense set of marker data (such as HapMap) [2,5]
v1.0.0
v2.1.0
19-07-2009
20-01-2010
SNPTEST a program for Frequentist and Bayesian tests of SNP association with binary (case-control)
and quantitative phenotypes that takes genotype uncertainty into account [2]
v2.1.0
20-03-2010
HAPGEN
a program to simulate case control datasets at linked SNP markers conditional upon a set
of known haplotypes [4]

v1.3.0
17-01-2008
META
a program to carryout meta-analysis of genetic studies.
v1.0.0
12-10-2009
GENECLUSTER
a program for location and detection of unobserved causal loci in fine-mapping experiments
and genome-wide association studies.
v1.0.0
19-03-2010
CHIAMO
a genotype calling algorithm for multi-cohort studies [1]
v0.2.1
22-10-2007
GTOOL
a program for (a) generating subsets of genotype data, and (b) converting genotype data
between the PED file format and the FILE FORMAT used by SNPTEST and IMPUTE.
v0.6.0

07-07-2009

 Homepage of the auther.

http://www.stats.ox.ac.uk/~marchini/#teaching

本 文引用地址: http://www.sciencenet.cn/m/user_content.aspx?id=306584
  评论这张
 
阅读(1491)| 评论(0)
推荐 转载

历史上的今天

在LOFTER的更多文章

评论

<#--最新日志,群博日志--> <#--推荐日志--> <#--引用记录--> <#--博主推荐--> <#--随机阅读--> <#--首页推荐--> <#--历史上的今天--> <#--被推荐日志--> <#--上一篇,下一篇--> <#-- 热度 --> <#-- 网易新闻广告 --> <#--右边模块结构--> <#--评论模块结构--> <#--引用模块结构--> <#--博主发起的投票-->
 
 
 
 
 
 
 
 
 
 
 
 
 
 

页脚

网易公司版权所有 ©1997-2017